PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3848_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 388aa    MW: 42645.1 Da    PI: 7.4997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3848_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-062843221154
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++++ +  L++l+ +      +K + a++L++A+eYIk L
  RrC3848_p1 284 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 322
                 5778999**********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.29273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0071283328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-9283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-6283326No hitNo description
SuperFamilySSF474591.7E-11283340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MPFITHNTQT LDKSNNDLGF QATSAICGSG GAWWNSPRSV MSPSDNFLSP CFRAAITSDE  60
FGCQENNIKS RNTCTDNNII FGQREADSDS GGSTVTIDST MQMMGLGFAS NSSSDWKHTI  120
LREDLNSSLL RSSQDHGPGF LSTTTSPYLL NPACSSSSSI SYSSSLLRTF YDPEPNPYSF  180
VSTTSCSIND PQVSWANNTT NPHHQAAYGL ISNFSNNINS RPLSKTTQNS FATTPQIIST  240
RVEDKAKNQK TRGQSESLKR AKYNEPASKK QRASTPSPLP TFKVRKENLR DQITSLQQLV  300
SPFGKTDTAS VLQEAIEYIK FLHDQVTVLS TPYMKQGAPI HQQQQVGNEN QELRAHGLCL  360
VPISSTFPVA NETTADFWTP TFGGNNFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3806491e-115AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
GenBankAY0856021e-115AY085602.1 Arabidopsis thaliana clone 159557 mRNA, complete sequence.
GenBankAY1130721e-115AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602811.10.0PREDICTED: transcription factor bHLH112-like isoform X1
RefseqXP_013672354.10.0PREDICTED: transcription factor bHLH112-like isoform X1
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A0D3AAS50.0A0A0D3AAS5_BRAOL; Uncharacterized protein
STRINGBra031413.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.10.0bHLH family protein